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EGFR-mutated pulmonary adenocarcinoma with concurrent PIK3CA mutation, and with acquired RET fusion and EGFR T790M mutation after afatinib therapy
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Brief Case Report
EGFR-mutated pulmonary adenocarcinoma with concurrent PIK3CA mutation, and with acquired RET fusion and EGFR T790M mutation after afatinib therapy
Minhye Kim1orcid, Ji Min Na1orcid, Gyeong-Won Lee2orcid, Seung Jun Lee3orcid, Jong Duk Kim4orcid, Jung Wook Yang5orcid
Journal of Pathology and Translational Medicine 2021;55(1):79-82.
DOI: https://doi.org/10.4132/jptm.2020.11.02
Published online: December 3, 2020

1Department of Pathology, Gyeonsang National University Hospital, Jinju, Korea

2Division of Hematology-Oncology, Department of Internal Medicine, Gyeonsang National University Hospital, Gyeongsang National University College of Medicine, Jinju, Korea

3Division of Pulmonology and Allergy, Department of Internal Medicine, Gyeonsang National University Hospital, Gyeongsang National University College of Medicine, Jinju, Korea

4Department of Cardiothoracic Surgery, Gyeonsang National University Hospital, Jinju, Korea

5Department of Pathology, Gyeonsang National University Hospital, Gyeongsang National University College of Medicine, Jinju, Korea

Corresponding Author: Jung Wook Yang, MD, PhD, Department of Pathology, Gyeongsang National University Hospital, Gyeongsang National University College of Medicine, 79 Gangnam-ro, Jinju 52727, Korea, Tel: +82-55-772-8065, Fax: +82-55-759-7952, E-mail: woogi1982@gmail.com
• Received: September 1, 2020   • Revised: October 21, 2020   • Accepted: November 2, 2020

© 2021 The Korean Society of Pathologists/The Korean Society for Cytopathology

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (https://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Generally, receptor tyrosine kinase (RTK) fusions are mutually exclusive of epidermal growth factor receptor (EGFR) mutations in non-small cell lung cancer (NSCLC). However, RTK fusions have recently emerged as mechanisms of actionable resistance to EGFR–tyrosine kinase inhibitors (TKIs) in EGFR-mutated NSCLC [1]. More than half of the acquired RET fusions following EGFR-TKI therapy occur in response to osimertinib (third-generation) treatment. To the best of our knowledge, only one case of NSCLC with acquired RET fusion following afatinib (second-generation) therapy has been reported in the English literature. Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha (PIK3CA) mutations are found infrequently (approximately 7%) in pulmonary adenocarcinoma [2]. Although other oncogenic driver mutations in NSCLC are mutually exclusive, PIK3CA mutations frequently coexist with other mutations [2,3]. Here, we report a rare case of EGFR-mutated pulmonary adenocarcinoma with concurrent PIK3CA mutation, displaying acquired RET fusion and EGFR T790M mutation following afatinib therapy.
A 64-year-old man without a known underlying disease was transferred with dyspnea and pleural effusion. He was a smoker with a 30 pack-year history. The clinical course is shown in Fig. 1. The cytological examination of the pleural fluid confirmed the diagnosis as metastatic adenocarcinoma of the lung (Fig. 1A). Chest computed tomography (CT) (Fig. 2A) suggested lung malignancy with pleural and lymph node metastases. Positron emission tomography showed a 3-cm-sized hypermetabolic mass in the right upper lobe of the lung. CT-guided needle biopsy was performed on the mass in the right upper lobe, and adenocarcinoma was diagnosed (Fig. 1B). The EGFR mutation status was tested using real-time polymerase chain reaction clamping method on the pleural fluid and our results revealed exon 19 deletion. The patient received afatinib treatment, and as a result, the size of the lung mass and amount of pleural fluid were found to be decreased on chest CT after 3 months (Fig. 2B). However, the disease was stable for 6 months, and next-generation sequencing (NGS) was performed on the previous needle biopsy specimen of the lung on an Ion Torrent S5 sequencer (Thermo Fisher Scientific, Waltham, MA, USA) using a commercially available targeted gene panel (Oncomine Comprehensive Assay v3, Thermo Fisher Scientific). The NGS results showed exon 19 deletion of EGFR and PIK3CA G118D mutation. The disease progressed in 7.5 months (Fig. 2C) and afatinib had to be discontinued. Video-assisted thoracoscopic wedge resection was performed on the right upper lobe of the lung, and the status of the EGFR mutation was re-evaluated. Microscopic examination of the specimen showed tumor heterogeneity with solid and cribriform components (Fig. 1C), and acinar and papillary components (Fig. 1D). A second EGFR mutation test showed T790M mutation and exon 19 deletion. The patient was prescribed with osimertinib, but the disease progressed in 3 months (Fig. 2D). Needle biopsy of the right axillary lymph node was performed for further molecular evaluation of the cancer. Metastatic adenocarcinoma with a solid and cribriform pattern was observed in the lymph node (Fig. 1E). The third EGFR mutation test showed exon 19 deletion but not T790M mutation. The second NGS test on axillary lymph node specimens revealed a new CCDC6-RET fusion in addition to exon 19 deletion of EGFR and PIK3CA G118D mutation. Additionally, a third NGS test was performed on the wedge resection specimen (second biopsy), which showed CCDC6-RET fusion with T790M mutation and exon 19 deletion of EGFR and PIK3CA G118D.
Viola et al. analyzed 86 cases of RTK fusions as acquired resistance in EGFR-mutated NSCLC [1]. The acquired RTK fusions occurred most frequently (57%) after the third generation EGFR-TKI therapy (first, 24%; second, 12%). The most frequently reported acquired RTK fusion in EGFR-TKI–resistant NSCLC was RET fusion, whereas CCDC6-RET fusion was the most common variant. Combined EGFR and RET inhibition with osimertinib and BLU-667 may be an effective therapeutic strategy in EGFR-TKI–resistant NSCLC with acquired RTK fusion [4]. The concurrent PIK3CA mutation is a known poor prognostic and predictive marker for EGFR-TKI therapy in pulmonary adenocarcinomas [2]. CCDC6-RET fusion and PIK3CA G118D mutation are not the most common variants in NSCLC with a single oncogenic driver mutation [1,5,6].
In this case, considering the third NGS result, the CCDC6-RET fusion probably occurred with EGFR T790M mutation after afatinib treatment. In lung wedge specimens resected after afatinib treatment, we observed tumor heterogeneity (Fig. 1C, D). We could not confirm which tumor population had CCDC6-RET fusion or EGFR T790M mutation or both. Considering morphological features (Fig. 1C, E), we assumed that tumor population with solid and cribriform patterns (Fig. 1C) had CCDC6-RET fusion.
In conclusion, we report a rare case of EGFR-mutated pulmonary adenocarcinoma with concurrent PIK3CA mutation, and acquired RET fusion and EGFR T790M mutation after EGFR-TKI therapy. Since NSCLC has a number of well-known oncogenic driver mutations, we believe that NGS is currently one of the best methods to determine the treatment of NSCLC, especially adenocarcinoma.
Fig. 1
Clinical course and pathological diagnosis of the patient. Adenocarcinoma was diagnosed using pleural fluid (A), and lung needle biopsy (B). Lung wedge resection specimen showed tumor heterogeneity; solid and cribriform components (C), and acinar and papillary components (D). (E) Metastatic adenocarcinoma was observed in the axillary LN. EGFR, epidermal growth factor receptor; PIK3CA, phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha; NGS, next-generation sequencing; RT-PCR, reverse tranascription; LN, lymph node.
jptm-2020-11-02f1.jpg
Fig. 2
Chest computed tomography. (A) Lung mass (arrow) in right upper lobe with pleural fluid (arrowhead) at diagnosis. (B) Decreased size of lung mass (arrow) and amount of pleural fluid (arrowhead) after 3 months of afatinib therapy. (C) Increased amount of pleural fluid (arrow) after 7.5 months with afatinib therapy. (D) Increased size of axillary (arrow) and mediastinal (arrowhead) lymph nodes after 3 months with osimertinib therapy.
jptm-2020-11-02f2.jpg
  • 1. Zhu VW, Klempner SJ, Ou SI. Receptor tyrosine kinase fusions as an actionable resistance mechanism to EGFR TKIs in EGFR-mutant non-small-cell lung cancer. Trends Cancer 2019; 5: 677-92. ArticlePubMed
  • 2. Eng J, Woo KM, Sima CS, et al. Impact of concurrent PIK3CA mutations on response to EGFR tyrosine kinase inhibition in EGFRmutant lung cancers and on prognosis in oncogene-driven lung adenocarcinomas. J Thorac Oncol 2015; 10: 1713-9. ArticlePubMedPMC
  • 3. Wang L, Hu H, Pan Y, et al. PIK3CA mutations frequently coexist with EGFR/KRAS mutations in non-small cell lung cancer and suggest poor prognosis in EGFR/KRAS wildtype subgroup. PLoS One 2014; 9: e88291.ArticlePubMedPMC
  • 4. Piotrowska Z, Isozaki H, Lennerz JK, et al. Landscape of acquired resistance to osimertinib in EGFR-mutant NSCLC and clinical validation of combined EGFR and RET inhibition with osimertinib and BLU-667 for acquired RET fusion. Cancer Discov 2018; 8: 1529-39. ArticlePubMedPMC
  • 5. Scheffler M, Bos M, Gardizi M, et al. PIK3CA mutations in non-small cell lung cancer (NSCLC): genetic heterogeneity, prognostic impact and incidence of prior malignancies. Oncotarget 2015; 6: 1315-26. ArticlePubMed
  • 6. Ahn JW, Kim HS, Yoon JK, et al. Identification of somatic mutations in EGFR/KRAS/ALK-negative lung adenocarcinoma in never-smokers. Genome Med 2014; 6: 18.ArticlePubMedPMC

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    • Case report: First evidence of impressive efficacy of modulated dose selpercatinib in a young Caucasian with ANK3-RET fusion-positive NSCLC
      Elisa De Carlo, Elisa Bertoli, Monica Schiappacassi, Brigida Stanzione, Alessandro Del Conte, Roberto Doliana, Michele Spina, Alessandra Bearz
      Frontiers in Oncology.2024;[Epub]     CrossRef
    • RET Proto-Oncogene—Not Such an Obvious Starting Point in Cancer Therapy
      Tomasz Kucharczyk, Paweł Krawczyk, Dariusz M. Kowalski, Adam Płużański, Tomasz Kubiatowski, Ewa Kalinka
      Cancers.2022; 14(21): 5298.     CrossRef

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      EGFR-mutated pulmonary adenocarcinoma with concurrent PIK3CA mutation, and with acquired RET fusion and EGFR T790M mutation after afatinib therapy
      J Pathol Transl Med. 2021;55(1):79-82.   Published online December 3, 2020
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    EGFR-mutated pulmonary adenocarcinoma with concurrent PIK3CA mutation, and with acquired RET fusion and EGFR T790M mutation after afatinib therapy
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    Fig. 1 Clinical course and pathological diagnosis of the patient. Adenocarcinoma was diagnosed using pleural fluid (A), and lung needle biopsy (B). Lung wedge resection specimen showed tumor heterogeneity; solid and cribriform components (C), and acinar and papillary components (D). (E) Metastatic adenocarcinoma was observed in the axillary LN. EGFR, epidermal growth factor receptor; PIK3CA, phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha; NGS, next-generation sequencing; RT-PCR, reverse tranascription; LN, lymph node.
    Fig. 2 Chest computed tomography. (A) Lung mass (arrow) in right upper lobe with pleural fluid (arrowhead) at diagnosis. (B) Decreased size of lung mass (arrow) and amount of pleural fluid (arrowhead) after 3 months of afatinib therapy. (C) Increased amount of pleural fluid (arrow) after 7.5 months with afatinib therapy. (D) Increased size of axillary (arrow) and mediastinal (arrowhead) lymph nodes after 3 months with osimertinib therapy.
    EGFR-mutated pulmonary adenocarcinoma with concurrent PIK3CA mutation, and with acquired RET fusion and EGFR T790M mutation after afatinib therapy

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