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Case Study
Drug-induced phospholipidosis of the kidney suspected to be caused by atomoxetine
Sung-Eun Choi1orcid, Kee Hyuck Kim2orcid, Minsun Jung3orcid, Jeong Hae Kie1orcid

DOI: https://doi.org/10.4132/jptm.2025.12.10
Published online: January 7, 2026

1Department of Pathology, National Health Insurance Service Ilsan Hospital, Goyang, Korea

2Department of Pediatrics, National Health Insurance Service Ilsan Hospital, Goyang, Korea

3Department of Pathology, Yonsei University College of Medicine, Seoul, Korea

Corresponding author: Jeong Hae Kie, MD, PhD Department of Pathology, National Health Insurance Service Ilsan Hospital, 100 Ilsan-ro, Goyang 10444, Korea Tel: +82-31-780-0892, Fax: , E-mail: jhkie88@nhimc.or.kr
• Received: August 22, 2025   • Revised: December 1, 2025   • Accepted: December 10, 2025

© The Korean Society of Pathologists/The Korean Society for Cytopathology

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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  • Fabry disease and drug-induced phospholipidosis (DIP) both exhibit zebra bodies on electron microscopy, complicating differential diagnosis. A 17-year-old male with microscopic hematuria and proteinuria had received atomoxetine (40 mg) for 11 months to treat attention-deficit hyperactivity disorder. Light microscopy showed one glomerulus with perihilar sclerosis and periglomerular fibrosis. Kidney biopsy revealed zebra bodies in podocytes, initially suggesting Fabry disease. However, α-galactosidase A enzyme activity was normal on tandem mass spectrometry. Next-generation sequencing of GLA identified only three benign variants. This represents the first reported case of atomoxetine-induced DIP. When zebra bodies are observed, clinicians should consider DIP caused by cationic amphiphilic drugs alongside Fabry disease. Atomoxetine meets the structural criteria for inducing DIP, and awareness of this potential complication is essential.
Fabry disease is a rare metabolic disorder characterized by systemic glycosphingolipid accumulation. As it is X-linked, males generally have more severe symptoms and faster progression than females [1]. However, there have been many reports of atypical variants in males with late onset and involvement of a single organ [2]. It is thought that this milder disease phenotype is due to a certain level of residual enzyme activity associated with missense mutations [3]. Pathological findings on kidney biopsy include enlarged and vacuolated podocytes on light microscopy, along with lamellated lipid inclusions (known as “zebra bodies”) in the vacuoles, which can be seen under an electron microscope [4]. Therefore, if zebra bodies are observed on kidney biopsy of a pediatric patient with proteinuria, Fabry disease should generally be considered the primary diagnosis.
However, drug-induced phospholipidosis (DIP) exhibits almost identical pathological findings to Fabry disease [5]. It is diagnosed by first ruling out Fabry disease and then identifying any suspected drugs, which may include hydroxychloroquine [5-8] or amiodarone [9,10]. Herein, we describe a case of DIP in association with atomoxetine (Strattera), a treatment for attention-deficit hyperactivity disorder (ADHD). To the best of our knowledge, this is the first report of atomoxetine as a possible causative agent for DIP.
A 17-year-old male patient visited our outpatient clinic after a school urine test showed microscopic hematuria and proteinuria. There were no specific symptoms. Prior to this visit, he had taken 40 mg of atomoxetine daily for 12 months as a treatment for ADHD. Proteinuria persisted for 28 months in urine tests conducted every 6 months; urine albumin-to-creatinine ratio gradually increased from 412 µg/mgCr to 474.6 µg/mgCr over 17 months, while the urine protein-to-creatinine ratio (UPCR) increased from 629.9 mg/g to 666.7 mg/g over the same period. A kidney biopsy was performed to determine the cause of proteinuria.
At the time of renal biopsy, the patient was normotensive (120/70 mmHg of blood pressure) with a normal heart rate (61 beats per minute) and a body mass index of 26.7. There was no edema. Physical examination was unremarkable otherwise. Urine analysis showed proteinuria (3+) and microscopic hematuria (1+, red blood cell [RBC] 6–10/high-power field) with dysmorphic RBCs (13%). UPCR was 1,392.5 mg/g. Serum creatinine was 0.78 mg/dL. Serum albumin was 4.4 g/dL. Cholesterol level was 195 mg/dL. C-reactive protein was not elevated at less than 0.2 mg/dL. C3 level was normal at 113 mg/dL. Anti-nuclear antibody and anti-neutrophil cytoplasmic antibody were not detected.
On light microscopy, a total of 20 glomeruli were present. A glomerulus with perihilar sclerosis was noted; it also had periglomerular fibrosis with Bowman’s capsule wrinkling (Fig. 1). The other glomeruli were normocellular without mesangial expansion or size enlargement. The capillary loops were patent without collapse. The glomerular basement membrane was not thickened or duplicated. Tubules showed mild atrophy with focal proteinaceous casts. Mild interstitial fibrosis was present with mild inflammatory infiltrates. Vessels were unremarkable. On immunofluorescent microscopy, six glomeruli were present. Minimal to mild deposits of C3 were present in the mesangium of the glomeruli. No deposits of IgG, IgA, IgM, C4, C1q, fibrinogen, kappa, or lambda were identified. On electron microscopy (EM), alternating lamellar structures of electron-dense and electron-lucent area, known as myeloid or zebra bodies, were identified in the cytoplasm of podocytes (Fig. 2). The foot processes were diffusely effaced, covering around 100% of the area. Based on histopathology findings, Fabry disease with secondary focal segmental glomerulosclerosis was suspected.
To confirm the diagnosis, the activity level of α-galactosidase A enzyme was measured using tandem mass spectrometry. The enzyme activity was within normal limits. Next-generation sequencing was performed on GLA, encompassing the coding region and the ±25 base pairs of the flanking region. The result was negative for all pathogenic, likely pathogenic, and variants of undetermined significance; only three benign variants were identified. Thorough family history taking was done, but none of the family members had typical symptoms or signs of Fabry disease, including paresthesia, renal dysfunction, cardiac arrythmia, or myocardial infarction. The patient also had no industrial exposure to silicon, which ruled out the possibility of silicon nephropathy. Taken together, the final diagnosis was DIP.
He was started on losartan, an angiotensin II receptor blocker, at a dose of 50 mg daily. He has been attending the outpatient clinic regularly every 6 months, with proteinuria and renal function remaining stable. Hematuria remained at 1+, and UPCR increased slightly to 1,948.3 mg/g at the last visit.
Fabry disease is an X-linked inherited disorder characterized by multiple systemic manifestations due to inherent shortages of an enzyme, α-galactosidase A, or its inactivity. α-galactosidase A is a hydrolase that resides in lysosomes and its deficiency leads to the progressive accumulation of glycosphingolipids such as globotriaosylceramide (GL-3), which impairs the function of tissues and organs. The symptoms of Fabry disease include paresthesias in the extremities, angiokeratomas, corneal opacity, anhidrosis, and heart and cerebrovascular dysfunction. When the kidney is affected, proteinuria and hematuria may occur, and in most cases, it progresses to renal failure when patients reach their 30s to 40s [11]. Typical light microscopic findings include foamy and vacuolated podocytes. On EM, enlarged lysosomes are filled with osmiophilic and lamellated membrane structures showing an onion skin-like appearance or parallel dense layers, so called myeloid or “zebra” bodies. Inclusions related to accumulated GL-3 are typically present in podocytes. They are also present in the mesangium, parietal epithelium, tubular epithelium, and vascular myocytes. In this case, although the patient had zebra bodies on EM, there were no relevant symptoms or family history.
Although rare, atypical Fabry disease must also be considered in the differential diagnosis. The distinguishing features of this condition include a later onset, milder symptoms, and higher α-galactosidase A activity (ranging from 1% to 35% compared to less than 1% in the classic form). While the condition is primarily observed in females due to its X-linked nature, it has been documented in 1.2% of males with end-stage kidney disease on hemodialysis [2]. It is possible for patients with atypical Fabry disease to exhibit near-normal α-galactosidase A activity, which is consistent with the observations made in this case. In such case, measuring GL-3 levels would be informative. We were unable to measure GL-3 levels due to practical constraints, which is a limitation. Despite the fact that routine sequence analysis is reported to encompass up to 95% of pathogenic variants [2], approximately 5% are likely to be identified exclusively through gene-targeted deletion/duplication analysis [2]. Although there are limitations to our analysis, including the absence of GL-3 level measurement and deletion/duplication assays, which prevent the complete exclusion of atypical Fabry disease, the absence of abnormalities in other organs, especially the heart, and the patient’s relatively young age of 17 years at the time of biopsy led to a diagnosis of DIP.
Another differential diagnosis that causes zebra bodies is DIP. Due to their physicochemical structure, cationic amphiphilic drugs (CADs) can easily pass through cell membranes, as they have both hydrophobic and hydrophilic domains. The acidic nature of the lysosome appears to provide a favorable environment for basic CADs to accumulate and become entrapped through protonation [12]. CADs inhibit lysosomal phospholipase activity by forming indigestible complexes with phospholipids [13], or by directly inhibiting phospholipase [14]. This leads to phospholipids accumulating in lysosomes [12]. Patients with DIP related to CADs may exhibit less extensive zebra bodies than those with Fabry disease [6] or curvilinear bodies (i.e., twisted microtubular structure). However, neither of these is a definitive distinguishing factor.
Drugs such as hydroxychloroquine [7,8], amiodarone [9], and ranolazine [15] have been reported to cause phospholipidosis in the kidney. Atomoxetine is a selective norepinephrine reuptake inhibitor that has been used to treat ADHD since 2002. Although atomoxetine has not been reported to cause DIP, its structure meets the criteria of CADs. It has a primary amine group corresponding to the hydrophilic domain, as well as two aromatic rings—a phenyl ring and an o-tolyl ether—corresponding to the hydrophobic domain [16]. The circumstances in which CADs can cause phospholipidosis are not well understood. The cumulative dose of the drug may be associated with this condition [17], but experiments in animals and in vivo to verify this have not yet been conducted. Similarly, the time to recover renal function following drug withdrawal varies, and full recovery does not always occur [8]. In this case, almost all the foot processes of the podocytes were effaced, and perihilar sclerosis progressed. Therefore, even after discontinuing the medication for 10 years, it is possible that proteinuria will persist.
Various types of drugs, such as antidepressants, antibiotics, antiarrhythmics, and antimalarials, belong to the CAD category, but their association with phospholipidosis and the mechanisms that cause cellular and clinical toxicity are relatively poorly understood. Although a predictive biomarker for phospholipidosis (i.e., urine di-22:6-BMP [18]) has been discovered, it is expected to be some time before it is introduced into drug monitoring in practice.
Zebra bodies were once considered a definitive finding of Fabry disease [19], but are now considered not uncommon in cases of DIP or silicon nephropathy [20]. Since many drugs belong to the CAD class, if zebra bodies are found in EM, DIP should be considered alongside Fabry disease.
Fig. 1.
Light microscopy reveals a glomerulus showing focal perihilar sclerosis (A, Masson’s trichrome) and periglomerular fibrosis with Bowman’s capsule wrinkling (B, periodic acid-Schiff). A glomerulus from Fabry disease, characterized by the presence of foamy histiocytes, is presented (C).
jptm-2025-12-10f1.jpg
Fig. 2.
Electron microscopy demonstrates zebra bodies (myeloid bodies) within the podocytes and diffuse effacement of the foot processes (A, ×800; B and C, ×2,000).
jptm-2025-12-10f2.jpg
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      Drug-induced phospholipidosis of the kidney suspected to be caused by atomoxetine
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      Fig. 1. Light microscopy reveals a glomerulus showing focal perihilar sclerosis (A, Masson’s trichrome) and periglomerular fibrosis with Bowman’s capsule wrinkling (B, periodic acid-Schiff). A glomerulus from Fabry disease, characterized by the presence of foamy histiocytes, is presented (C).
      Fig. 2. Electron microscopy demonstrates zebra bodies (myeloid bodies) within the podocytes and diffuse effacement of the foot processes (A, ×800; B and C, ×2,000).
      Drug-induced phospholipidosis of the kidney suspected to be caused by atomoxetine

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